ij.wave

Class WaveUtils

java.lang.Object

ij.wave.WaveUtils

public class WaveUtils
extends java.lang.Object

Constructor Summary

Constructors

Constructor and Description
WaveUtils()

Method Summary

Modifier and Type	Method and Description
static double[]	centralFiniteDifference(double[] values, int h2)
static Wave	centralFiniteDifference(Wave wave, int h2)
static Waves	filter(Waves waves1, Waves waves2) waves1 should be the list of candidates to eliminate if they appear in waves2.
static java.util.ArrayList	getBurstMarkers(java.util.ArrayList waveMarkers) Returns the WaveMarkers of type BURST in the list passed as argument.
static double	getBurstPeriodAverage(java.util.ArrayList waveMarkers)
static double	getBurstPeriodAverage(java.util.ArrayList waveMarkers, boolean filterInput)
static double[]	getBurstPeriods(java.util.ArrayList waveMarkers)
static double[]	getBurstPeriods(java.util.ArrayList waveMarkers, boolean filterInput)
static double	getBurstPeriodStderr(java.util.ArrayList waveMarkers)
static double	getBurstPeriodStdev(java.util.ArrayList waveMarkers)
static double	getBurstPeriodStdev(java.util.ArrayList waveMarkers, boolean filterInput)
static java.io.File[]	getEnsembleFiles()
static java.io.File[]	getEnsembleFiles(java.lang.String directory)
static Waves[]	getEnsembles()
static Waves[]	getEnsembles(java.io.File[] ensembleFiles)
static java.util.ArrayList	getMarkersByType(java.util.ArrayList waveMarkers, java.lang.String type) Filters the WaveMarkers in the argument by type.
static java.util.ArrayList	getStimulusMarkers(java.util.ArrayList waveMarkers) Returns the WaveMarkers of type STIMULUS in the list passed as argument.
static Waves	getWavesFromMatFile(java.lang.String filename)
static Waves	intersection(Waves waves1, Waves waves2) Returns only the waves that are in both waves1 and waves2 from the waves2 list.
static java.util.List	loadMarkers(java.lang.String filename)
static double[][]	loadMatrixFromMat(java.lang.String filename, java.lang.String matrixName)
static void	saveMarkers(java.util.List markers, java.lang.String filename)
static void	saveMarkers(java.util.List markers, java.lang.String filename, boolean saveHiddenMarkers)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

WaveUtils

public WaveUtils()

Method Detail

getMarkersByType

public static java.util.ArrayList getMarkersByType(java.util.ArrayList waveMarkers,
                                                   java.lang.String type)

Filters the WaveMarkers in the argument by type.

getBurstMarkers

public static java.util.ArrayList getBurstMarkers(java.util.ArrayList waveMarkers)

Returns the WaveMarkers of type BURST in the list passed as argument.

getStimulusMarkers

public static java.util.ArrayList getStimulusMarkers(java.util.ArrayList waveMarkers)

Returns the WaveMarkers of type STIMULUS in the list passed as argument.

getBurstPeriodAverage

public static double getBurstPeriodAverage(java.util.ArrayList waveMarkers)

getBurstPeriods

public static double[] getBurstPeriods(java.util.ArrayList waveMarkers)

getBurstPeriods

public static double[] getBurstPeriods(java.util.ArrayList waveMarkers,
                                       boolean filterInput)

getBurstPeriodAverage

public static double getBurstPeriodAverage(java.util.ArrayList waveMarkers,
                                           boolean filterInput)

getBurstPeriodStdev

public static double getBurstPeriodStdev(java.util.ArrayList waveMarkers)

getBurstPeriodStdev

public static double getBurstPeriodStdev(java.util.ArrayList waveMarkers,
                                         boolean filterInput)

getBurstPeriodStderr

public static double getBurstPeriodStderr(java.util.ArrayList waveMarkers)

loadMarkers

public static java.util.List loadMarkers(java.lang.String filename)

saveMarkers

public static void saveMarkers(java.util.List markers,
                               java.lang.String filename)

saveMarkers

public static void saveMarkers(java.util.List markers,
                               java.lang.String filename,
                               boolean saveHiddenMarkers)

centralFiniteDifference

public static double[] centralFiniteDifference(double[] values,
                                               int h2)

centralFiniteDifference

public static Wave centralFiniteDifference(Wave wave,
                                           int h2)

getEnsembleFiles

public static java.io.File[] getEnsembleFiles()

getEnsembleFiles

public static java.io.File[] getEnsembleFiles(java.lang.String directory)

loadMatrixFromMat

public static double[][] loadMatrixFromMat(java.lang.String filename,
                                           java.lang.String matrixName)

getWavesFromMatFile

public static Waves getWavesFromMatFile(java.lang.String filename)

getEnsembles

public static Waves[] getEnsembles()

getEnsembles

public static Waves[] getEnsembles(java.io.File[] ensembleFiles)

intersection

public static Waves intersection(Waves waves1,
                                 Waves waves2)

Returns only the waves that are in both waves1 and waves2 from the waves2 list.

filter

public static Waves filter(Waves waves1,
                           Waves waves2)

waves1 should be the list of candidates to eliminate if they appear in waves2. In other words, the return waves should only include waves in waves1 if they are NOT already in waves2.