ij.wave

Class CTA_Utils

java.lang.Object

ij.wave.CTA_Utils

public class CTA_Utils
extends java.lang.Object

Constructor Summary

Constructors

Constructor and Description
CTA_Utils()

Method Summary

Modifier and Type	Method and Description
static void	accumulateImages(java.util.Vector images, java.lang.String title)
static void	averageCycleWindows(java.util.Vector images)
static ImagePlus	generateWindowImages(ImagePlus imp, double frameRate_Hz, int burstIndex, double leadingOffset, double tailingOffset, java.lang.String epochName, boolean displayEachCyclesTimeseries, boolean doZProjection)
static java.util.Vector	getBurstCycleIndices(Wave referenceWave, double absThreshold, double thresholdMax, double tailingOffset, double tailingOffsetMax)
static java.util.Vector	getBurstCycleIndices(Wave referenceWave, double absThreshold, double thresholdMax, double tailingOffset, double tailingOffsetMax, boolean showBurstCycleIndices, boolean advanceAfterDetect)
static java.util.Vector	getBurstCycleIndicesBelowThreshold(Wave referenceWave, double absThreshold, double thresholdMax, double tailingOffset, double tailingOffsetMax)
static java.util.Vector	getBurstCycleIndicesBelowThreshold(Wave referenceWave, double absThreshold, double thresholdMax, double tailingOffset, double tailingOffsetMax, boolean showBurstCycleIndices, boolean advanceAfterDetect) I need to check that the advance step is working correctly here (probably not)
static java.util.Vector	getBurstCycleIndicesFromTriggerMarkers(java.util.ArrayList triggerMarkers)
static java.util.Vector	getPeakFrames(java.lang.String filename)
static int	makeCTAs(Wave[] wavesArray, java.lang.String prefix, double leadingOffset, double tailingOffset, boolean addEachCycleToWaveManager, java.util.Vector indiceVectors)
static int	makeCTAs(Wave[] wavesArray, java.lang.String prefix, double thresholdValue, double leadingOffset, double tailingOffset, boolean addEachCycleToWaveManager, Bursts bursts)
static int	makeCTAs(Waves waves, java.lang.String prefix, double thresholdValue, double leadingOffset, double tailingOffset, boolean addEachCycleToWaveManager, Bursts bursts)
static void	showElectroPlot(Waves waves, java.util.Vector indiceVectors)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CTA_Utils

public CTA_Utils()

Method Detail

getBurstCycleIndices

public static java.util.Vector getBurstCycleIndices(Wave referenceWave,
                                                    double absThreshold,
                                                    double thresholdMax,
                                                    double tailingOffset,
                                                    double tailingOffsetMax)

getBurstCycleIndices

public static java.util.Vector getBurstCycleIndices(Wave referenceWave,
                                                    double absThreshold,
                                                    double thresholdMax,
                                                    double tailingOffset,
                                                    double tailingOffsetMax,
                                                    boolean showBurstCycleIndices,
                                                    boolean advanceAfterDetect)

getBurstCycleIndicesBelowThreshold

public static java.util.Vector getBurstCycleIndicesBelowThreshold(Wave referenceWave,
                                                                  double absThreshold,
                                                                  double thresholdMax,
                                                                  double tailingOffset,
                                                                  double tailingOffsetMax)

getBurstCycleIndicesBelowThreshold

public static java.util.Vector getBurstCycleIndicesBelowThreshold(Wave referenceWave,
                                                                  double absThreshold,
                                                                  double thresholdMax,
                                                                  double tailingOffset,
                                                                  double tailingOffsetMax,
                                                                  boolean showBurstCycleIndices,
                                                                  boolean advanceAfterDetect)

I need to check that the advance step is working correctly here (probably not)

makeCTAs

public static int makeCTAs(Waves waves,
                           java.lang.String prefix,
                           double thresholdValue,
                           double leadingOffset,
                           double tailingOffset,
                           boolean addEachCycleToWaveManager,
                           Bursts bursts)

makeCTAs

public static int makeCTAs(Wave[] wavesArray,
                           java.lang.String prefix,
                           double thresholdValue,
                           double leadingOffset,
                           double tailingOffset,
                           boolean addEachCycleToWaveManager,
                           Bursts bursts)

makeCTAs

public static int makeCTAs(Wave[] wavesArray,
                           java.lang.String prefix,
                           double leadingOffset,
                           double tailingOffset,
                           boolean addEachCycleToWaveManager,
                           java.util.Vector indiceVectors)

showElectroPlot

public static void showElectroPlot(Waves waves,
                                   java.util.Vector indiceVectors)

getBurstCycleIndicesFromTriggerMarkers

public static java.util.Vector getBurstCycleIndicesFromTriggerMarkers(java.util.ArrayList triggerMarkers)

averageCycleWindows

public static void averageCycleWindows(java.util.Vector images)

accumulateImages

public static void accumulateImages(java.util.Vector images,
                                    java.lang.String title)

generateWindowImages

public static ImagePlus generateWindowImages(ImagePlus imp,
                                             double frameRate_Hz,
                                             int burstIndex,
                                             double leadingOffset,
                                             double tailingOffset,
                                             java.lang.String epochName,
                                             boolean displayEachCyclesTimeseries,
                                             boolean doZProjection)

getPeakFrames

public static java.util.Vector getPeakFrames(java.lang.String filename)