ij.gui

Class PlotWindow

java.lang.Object

java.awt.Component

java.awt.Container

java.awt.Window

java.awt.Frame

ij.gui.ImageWindow

ij.gui.PlotWindow

All Implemented Interfaces:

ImageListener, java.awt.datatransfer.ClipboardOwner, java.awt.event.ActionListener, java.awt.event.FocusListener, java.awt.event.KeyListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.awt.event.MouseWheelListener, java.awt.event.WindowListener, java.awt.event.WindowStateListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.lang.Runnable, java.util.EventListener, javax.accessibility.Accessible

public class PlotWindow
extends ImageWindow
implements java.awt.event.ActionListener, java.awt.datatransfer.ClipboardOwner, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.awt.event.KeyListener, ImageListener, java.lang.Runnable

This class implements the Analyze/Plot Profile command.

Author:

Michael Schmid, Wayne Rasband

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class java.awt.Frame

java.awt.Frame.AccessibleAWTFrame

Nested classes/interfaces inherited from class java.awt.Window

java.awt.Window.AccessibleAWTWindow, java.awt.Window.Type

Nested classes/interfaces inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

Fields

Modifier and Type	Field and Description
static boolean	autoClose Automatically close window after saving values.
static int	BOX Display points using an box-shaped mark.
static int	CIRCLE Display points using a circle 5 pixels in diameter.
static int	CROSS Display points using an cross-shaped mark.
static boolean	interpolate Interpolate line profiles.
static int	LINE Connect points with solid lines.
static boolean	listValues Display the XY coordinates in a separate window.
static boolean	noGridLines Add grid lines to plots
static int	plotHeight The height of the plot in pixels.
static int	plotWidth The width of the plot in pixels.
static boolean	saveXValues Save x-values only.
static int	TRIANGLE Display points using an tiangular mark.
static int	X Display points using an X-shaped mark.

Fields inherited from class ij.gui.ImageWindow

closed, ic, ij, imp, MIN_HEIGHT, MIN_WIDTH, running, running2

Fields inherited from class java.awt.Frame

CROSSHAIR_CURSOR, DEFAULT_CURSOR, E_RESIZE_CURSOR, HAND_CURSOR, ICONIFIED, MAXIMIZED_BOTH, MAXIMIZED_HORIZ, MAXIMIZED_VERT, MOVE_CURSOR, N_RESIZE_CURSOR, NE_RESIZE_CURSOR, NORMAL, NW_RESIZE_CURSOR, S_RESIZE_CURSOR, SE_RESIZE_CURSOR, SW_RESIZE_CURSOR, TEXT_CURSOR, W_RESIZE_CURSOR, WAIT_CURSOR

Fields inherited from class java.awt.Component

accessibleContext, BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, PROPERTIES, SOMEBITS

Constructor Summary

Constructors

Constructor and Description
PlotWindow(java.lang.String title, java.lang.String xLabel, java.lang.String yLabel, double[] xValues, double[] yValues) Deprecated. replaced by the Plot class.
PlotWindow(java.lang.String title, java.lang.String xLabel, java.lang.String yLabel, float[] xValues, float[] yValues) Deprecated. replaced by the Plot class.

Method Summary

Modifier and Type	Method and Description
void	actionPerformed(java.awt.event.ActionEvent e)
void	addErrorBars(float[] errorBars) Adds error bars to the plot.
void	addLabel(double x, double y, java.lang.String label) Draws a label.
void	addPoints(double[] x, double[] y, int shape) Adds a set of points to the plot using double arrays.
void	addPoints(float[] x, float[] y, int shape) Adds a set of points to the plot or adds a curve if shape is set to LINE.
void	changeFont(java.awt.Font font) Changes the font.
void	draw() Displays the plot.
void	drawPlot(Plot plot) Draws a new plot in this window.
ResultsTable	getResultsTable() Returns the X and Y plot values as a ResultsTable.
float[]	getXValues()
float[]	getYValues()
void	imageClosed(ImagePlus imp)
void	imageOpened(ImagePlus imp)
void	imageUpdated(ImagePlus imp)
void	keyPressed(java.awt.event.KeyEvent e)
void	keyReleased(java.awt.event.KeyEvent e)
void	keyTyped(java.awt.event.KeyEvent e)
void	lostOwnership(java.awt.datatransfer.Clipboard clipboard, java.awt.datatransfer.Transferable contents)
void	mouseClicked(java.awt.event.MouseEvent e)
void	mouseDragged(java.awt.event.MouseEvent e)
void	mouseEntered(java.awt.event.MouseEvent e)
void	mouseExited(java.awt.event.MouseEvent e)
void	mouseMoved(int x, int y) Updates the graph X and Y values when the mouse is moved.
void	mouseMoved(java.awt.event.MouseEvent e)
void	mousePressed(java.awt.event.MouseEvent e)
void	mouseReleased(java.awt.event.MouseEvent e)
void	run()
static void	savePreferences(java.util.Properties prefs) Called once when ImageJ quits.
void	setColor(java.awt.Color c) Changes the drawing color.
void	setLimits(double xMin, double xMax, double yMin, double yMax) Sets the x-axis and y-axis range.
void	setLineWidth(int lineWidth) Changes the line width.

Methods inherited from class ij.gui.ImageWindow

add, centerNextImage, close, close, copy, createSubtitle, drawInfo, focusGained, focusLost, getCanvas, getImagePlus, getInitialMagnification, getInsets, getMaximumBounds, isClosed, maximize, minimize, mouseWheelMoved, paint, paste, setImage, setLocationAndSize, setNextLocation, setNextLocation, toString, updateImage, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened, windowStateChanged

Methods inherited from class java.awt.Frame

addNotify, getAccessibleContext, getCursorType, getExtendedState, getFrames, getIconImage, getMaximizedBounds, getMenuBar, getState, getTitle, isResizable, isUndecorated, paramString, remove, removeNotify, setBackground, setCursor, setExtendedState, setIconImage, setMaximizedBounds, setMenuBar, setOpacity, setResizable, setShape, setState, setTitle, setUndecorated

Methods inherited from class java.awt.Window

addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, hide, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, postEvent, processEvent, processWindowEvent, processWindowFocusEvent, processWindowStateEvent, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, setVisible, show, toBack, toFront

Methods inherited from class java.awt.Container

add, add, add, add, addContainerListener, addImpl, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, setLayout, transferFocusDownCycle, update, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphics, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setName, setPreferredSize, show, size, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.awt.MenuContainer

getFont, postEvent

Field Detail

CIRCLE

public static final int CIRCLE

Display points using a circle 5 pixels in diameter.

See Also:

Constant Field Values

X

public static final int X

Display points using an X-shaped mark.

See Also:

Constant Field Values

BOX

public static final int BOX

Display points using an box-shaped mark.

See Also:

Constant Field Values

TRIANGLE

public static final int TRIANGLE

Display points using an tiangular mark.

See Also:

Constant Field Values

CROSS

public static final int CROSS

Display points using an cross-shaped mark.

See Also:

Constant Field Values

LINE

public static final int LINE

Connect points with solid lines.

See Also:

Constant Field Values

saveXValues

public static boolean saveXValues

Save x-values only. To set, use Edit/Options/ Profile Plot Options.

autoClose

public static boolean autoClose

Automatically close window after saving values. To set, use Edit/Options/Profile Plot Options.

plotWidth

public static int plotWidth

The width of the plot in pixels.

plotHeight

public static int plotHeight

The height of the plot in pixels.

listValues

public static boolean listValues

Display the XY coordinates in a separate window. To set, use Edit/Options/Profile Plot Options.

interpolate

public static boolean interpolate

Interpolate line profiles. To set, use Edit/Options/Profile Plot Options.

noGridLines

public static boolean noGridLines

Add grid lines to plots

Constructor Detail

PlotWindow

public PlotWindow(java.lang.String title,
                  java.lang.String xLabel,
                  java.lang.String yLabel,
                  float[] xValues,
                  float[] yValues)

Deprecated. replaced by the Plot class.

PlotWindow

public PlotWindow(java.lang.String title,
                  java.lang.String xLabel,
                  java.lang.String yLabel,
                  double[] xValues,
                  double[] yValues)

Deprecated. replaced by the Plot class.

Method Detail

setLimits

public void setLimits(double xMin,
                      double xMax,
                      double yMin,
                      double yMax)

Sets the x-axis and y-axis range.

addPoints

public void addPoints(float[] x,
                      float[] y,
                      int shape)

Adds a set of points to the plot or adds a curve if shape is set to LINE.

Parameters:

x - the x-coodinates

y - the y-coodinates

shape - CIRCLE, X, BOX, TRIANGLE, CROSS or LINE

addPoints

public void addPoints(double[] x,
                      double[] y,
                      int shape)

Adds a set of points to the plot using double arrays. Must be called before the plot is displayed.

addErrorBars

public void addErrorBars(float[] errorBars)

Adds error bars to the plot.

addLabel

public void addLabel(double x,
                     double y,
                     java.lang.String label)

Draws a label.

setColor

public void setColor(java.awt.Color c)

Changes the drawing color. The frame and labels are always drawn in black.

setLineWidth

public void setLineWidth(int lineWidth)

Changes the line width.

changeFont

public void changeFont(java.awt.Font font)

Changes the font.

draw

public void draw()

Displays the plot.

mouseMoved

public void mouseMoved(int x,
                       int y)

Updates the graph X and Y values when the mouse is moved. Overrides mouseMoved() in ImageWindow.

Overrides:

mouseMoved in class ImageWindow

See Also:

ImageWindow.mouseMoved(int, int)

lostOwnership

public void lostOwnership(java.awt.datatransfer.Clipboard clipboard,
                          java.awt.datatransfer.Transferable contents)

Specified by:

lostOwnership in interface java.awt.datatransfer.ClipboardOwner

actionPerformed

public void actionPerformed(java.awt.event.ActionEvent e)

Specified by:

actionPerformed in interface java.awt.event.ActionListener

getXValues

public float[] getXValues()

getYValues

public float[] getYValues()

getResultsTable

public ResultsTable getResultsTable()

Returns the X and Y plot values as a ResultsTable.

drawPlot

public void drawPlot(Plot plot)

Draws a new plot in this window.

savePreferences

public static void savePreferences(java.util.Properties prefs)

Called once when ImageJ quits.

mousePressed

public void mousePressed(java.awt.event.MouseEvent e)

Specified by:

mousePressed in interface java.awt.event.MouseListener

mouseDragged

public void mouseDragged(java.awt.event.MouseEvent e)

Specified by:

mouseDragged in interface java.awt.event.MouseMotionListener

mouseClicked

public void mouseClicked(java.awt.event.MouseEvent e)

Specified by:

mouseClicked in interface java.awt.event.MouseListener

keyPressed

public void keyPressed(java.awt.event.KeyEvent e)

Specified by:

keyPressed in interface java.awt.event.KeyListener

mouseReleased

public void mouseReleased(java.awt.event.MouseEvent e)

Specified by:

mouseReleased in interface java.awt.event.MouseListener

mouseExited

public void mouseExited(java.awt.event.MouseEvent e)

Specified by:

mouseExited in interface java.awt.event.MouseListener

mouseEntered

public void mouseEntered(java.awt.event.MouseEvent e)

Specified by:

mouseEntered in interface java.awt.event.MouseListener

mouseMoved

public void mouseMoved(java.awt.event.MouseEvent e)

Specified by:

mouseMoved in interface java.awt.event.MouseMotionListener

keyTyped

public void keyTyped(java.awt.event.KeyEvent e)

Specified by:

keyTyped in interface java.awt.event.KeyListener

keyReleased

public void keyReleased(java.awt.event.KeyEvent e)

Specified by:

keyReleased in interface java.awt.event.KeyListener

imageOpened

public void imageOpened(ImagePlus imp)

Specified by:

imageOpened in interface ImageListener

imageUpdated

public void imageUpdated(ImagePlus imp)

Specified by:

imageUpdated in interface ImageListener

imageClosed

public void imageClosed(ImagePlus imp)

Specified by:

imageClosed in interface ImageListener

run

public void run()

Specified by:

run in interface java.lang.Runnable